PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008819
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ERF
Protein Properties Length: 205aa    MW: 22922.6 Da    PI: 5.3823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55091741PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-101740PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174090155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++ a+++++g
  Aan008819 40 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYRNPEMAARAHDVAALSIKG 90
               68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-114090IPR001471AP2/ERF domain
PROSITE profilePS5103222.3264198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-304199IPR001471AP2/ERF domain
SMARTSM003802.3E-3341104IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-214199IPR016177DNA-binding domain
PRINTSPR003673.3E-94253IPR001471AP2/ERF domain
CDDcd000183.03E-3042100No hitNo description
PRINTSPR003673.3E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSELDDCSS NSQPSSPINK PQKVKNRSNK RNRDTSMKHP VYRGVRMRNW GKWVSEIREP  60
RKKSRIWLGT YRNPEMAARA HDVAALSIKG NSAIINFPEL VGALPRPVSS SPRDVQAAAA  120
KAAAMENFDF PSVSESSEEL SEITQLPILE PGLDSELSNE FVYIDSVLDG WLYPPQWMNN  180
GGDGDNENLS GQKNVISNDF ESLQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-183299573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743105.14e-99dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2U1KT451e-146A0A2U1KT45_ARTAN; Uncharacterized protein
STRINGXP_004291182.13e-68(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]