PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan008863
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 204aa    MW: 22476.3 Da    PI: 10.6367
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55106833PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-55394PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.6e-19125159135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Aan008863 125 CSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRL 159
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-15119173IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.648119155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14120181No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15123157IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.41E-13124181No hitNo description
PfamPF003209.3E-17125159IPR000679Zinc finger, GATA-type
PROSITE patternPS003440125150IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
XDDSFSCGYS LTCPAGKFPE KKQEPKPEPE TGLVVKPSFT TPVQTKARSK RFRTGGRVWS  60
LGSNALTEST TSSSSSSSCT SNPWLFLHDS LSNQTAESFL GRKPVKRQKK KTLTGPVDPV  120
QPRRCSHCGV QKTPQWRTGP LGAKTLCNAC GVRFKSGRLL PEYRPACSPT FSSEVHSNNH  180
RKVLEMRMKK EAVQPGLTQP VQSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101110RKPVKRQKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024975662.13e-95GATA transcription factor 5-like
RefseqXP_024975663.13e-95GATA transcription factor 5-like
SwissprotQ9FH577e-47GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2U1M4B61e-143A0A2U1M4B6_ARTAN; GATA transcription factor
STRINGXP_009346302.12e-63(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-47GATA transcription factor 5