PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan009418

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB

Protein Properties

Length: 187aa MW: 20797.4 Da PI: 9.4304

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41930503	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62	1.3e-19	5	50	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed+ l ++v+++G+++W++I++ ++ gR++k+c++rw + Aan009418 5 KGPWSPDEDQMLTNLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50 79****************************.*********985 PP
2	Myb_DNA-binding	56.2	8.1e-18	59	101	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Aan009418 59 AFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 101 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	28.845	1	55	IPR017930	Myb domain
SuperFamily	SSF46689	1.0E-32	2	98	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-17	4	53	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-19	5	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-26	6	58	IPR009057	Homeodomain-like
CDD	cd00167	4.15E-17	7	49	No hit	No description
SMART	SM00717	1.8E-14	56	104	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.97	57	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	59	105	IPR009057	Homeodomain-like
Pfam	PF00249	4.6E-15	59	101	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-12	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MDRIKGPWSP DEDQMLTNLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPGVEHRAF 60 TPEEDETILR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCSSMT NEEFNELQVQ 120 QPMLKRSVSA GSAVPISSSS GYFHQFNTPC SPTGSDISDS NIQGLTSSSS HPFRPITTIV 180 PVPVPDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	7e-42	4	106	3	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	3e-41	4	106	57	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-41	4	106	57	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	6e-42	4	106	3	105	C-Myb DNA-Binding Domain
1msf_C	6e-42	4	106	3	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269\|PubMed:23809151, ECO:0000269\|PubMed:24894996}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress. {ECO:0000269\|PubMed:23809151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024982798.1	5e-99	transcription factor MYB44-like
Swissprot	O23160	1e-72	MYB73_ARATH; Transcription factor MYB73
TrEMBL	A0A2U1MUF8	1e-131	A0A2U1MUF8_ARTAN; MYB
STRING	AES94624	2e-86	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-69	myb domain protein 73

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]