PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan009775
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YB
Protein Properties Length: 177aa    MW: 19365.2 Da    PI: 4.2961
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55092295PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-156838PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.53.3e-1320114694
      NF-YB   6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                ++lP a v r++k+ l +      + ++ kd+     e    fi ++++ a+d c++ kr+tin++d++ al ++ f +++++l++ l+++++ +
  Aan009775  20 EELPKAVVRRVVKEKLSQlsqdgaDIQVLKDSLSAFSESSRIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIASLRTSLEEFKQKN 114
                689**********998752211114467899999999***************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-3118155IPR009072Histone-fold
PfamPF008081.2E-92191IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.24E-2422148IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MATSPKATPA VSEKVIGEAE ELPKAVVRRV VKEKLSQLSQ DGADIQVLKD SLSAFSESSR  60
IFIHYLSATA NDICKESKRQ TINAEDVFKA LEEIEFPEFI ASLRTSLEEF KQKNIKRKSD  120
SSKAKEAKKS KTDEPATENG EANENGNEDE NGVDENGVDE NGVDENGVDE NGVADTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768952.14e-78DNA polymerase epsilon subunit 3-like
TrEMBLA0A1B0T7109e-97A0A1B0T710_CHRMO; NF-Y protein (Fragment)
STRINGMigut.D02442.1.p3e-53(Erythranthe guttata)
STRINGXP_010031521.15e-53(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.19e-37nuclear factor Y, subunit B11