PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan009778

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 177aa MW: 18941.4 Da PI: 4.0196

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55112664	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.1	7.2e-14	151	173	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG Ck+G++CkF+H+ Aan009778 151 EDCSYYMRTGLCKFGSNCKFNHP 173 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.2E-6	147	174	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.075	147	175	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-7	147	175	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-11	151	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	153	172	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
XLDSYGEKGE NVDGSYAENV AGSYGGYSEK GENVAGSYGG YSEKGENVDY GGYNEKGENI 60 SYGVYGENVD GGYGENVDGG YDGSYGVYGE KGKNFEHENV DGGGYDGNYG GYGGGWEEGG 120 SGNTNNVVDG DDDDDEGGIR SYHFPLRPDA EDCSYYMRTG LCKFGSNCKF NHPLRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2U1KWZ1	1e-111	A0A2U1KWZ1_ARTAN; Zinc finger, CCCH-type

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-14	C3H family protein