PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan009876

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 174aa MW: 17152.8 Da PI: 8.4849

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41933341	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	45.8	1e-14	68	93	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg Aan009876 68 WKTRICNKWEQTGYCPFGSKCHFAHG 93 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.0E-17	62	98	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-10	64	96	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-9	67	94	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.657	67	95	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-12	68	93	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
XESVVISLGP GSGGGYGGAG GGGGGGGVGS GGGGVVSGGG GGGGGTVIVV GGGADAAGSN 60 SLLKPSNWKT RICNKWEQTG YCPFGSKCHF AHGAADAKDS PTSMDPNKQG MMPSKTPIET 120 IVAAGPSAAH SDGYHLGAPS RLPGVIPRTG HRFQKWKGPD KISRIYGDWI DDIE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022000361.1	7e-72	zinc finger CCCH domain-containing protein 12-like isoform X2
TrEMBL	A0A2U1MKK9	9e-85	A0A2U1MKK9_ARTAN; Zinc finger CCCH domain-containing protein 56
STRING	XP_009371210.1	3e-44	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	9e-31	C3H family protein