PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010102
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 169aa    MW: 18459 Da    PI: 10.3161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-38711PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA627.1e-202558134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Aan010102 25 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 58
               ********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-201971IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-132161No hitNo description
PROSITE profilePS5011412.4662355IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.16E-122454No hitNo description
PfamPF003201.5E-172558IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
PMEETTNSCS INSTSSNNNI QIRVCSDCNT TKTPLWRSGP RGPKSLCNAC GIRQRKARKA  60
MAAAAAEAAG ETNKNVSSDK PTSLKATKVL HKDHKKTNIG HVSKYKKRQY SNQISTNLLP  120
SSSSPTRKNC VEEFLVSLRK NLAIHGVFPQ DEKEAAILLM ALSCGYAHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757094.14e-67GATA transcription factor 21-like
RefseqXP_023757098.14e-67GATA transcription factor 21-like
TrEMBLA0A2U1M6H92e-94A0A2U1M6H9_ARTAN; Zinc finger, NHR/GATA-type
STRINGXP_006475927.17e-40(Citrus sinensis)
STRINGXP_006450837.17e-40(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-18cytokinin-responsive gata factor 1