PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan010235

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

NAC

Protein Properties

Length: 165aa MW: 19253.1 Da PI: 9.6676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-108333	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.5e-52	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd++k++Pw+Lp + e+e +fFs+++ ky++g+r+nrat+sgyWkatg dk+++++ +++l Aan010235 14 LPPGFRFHPTDEELVVQYLKRKVHAFPLPA-SIIPEVDVCKSDPWELPGN---CEQERFFFSTKEVKYPNGNRSNRATQSGYWKATGLDKKIVTScNNQL 109 79**************************.89***********44...46899*******************************9988899 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+g+ p+g++tdW+mheyrl Aan010235 110 VGMKKTLVFYRGKPPNGSRTDWIMHEYRL 138 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-56	10	146	IPR003441	NAC domain
PROSITE profile	PS51005	52.041	14	162	IPR003441	NAC domain
Pfam	PF02365	3.9E-28	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MERLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVHAFP LPASIIPEVD VCKSDPWELP 60 GNCEQERFFF STKEVKYPNG NRSNRATQSG YWKATGLDKK IVTSCNNQLV GMKKTLVFYR 120 GKPPNGSRTD WIMHEYRLAT PNPQNPPQVH FDSIYIFAFK YNCYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	12	145	15	149	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	12	145	15	149	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	12	145	15	149	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	12	145	15	149	NO APICAL MERISTEM PROTEIN
3swm_A	2e-48	12	145	18	152	NAC domain-containing protein 19
3swm_B	2e-48	12	145	18	152	NAC domain-containing protein 19
3swm_C	2e-48	12	145	18	152	NAC domain-containing protein 19
3swm_D	2e-48	12	145	18	152	NAC domain-containing protein 19
3swp_A	2e-48	12	145	18	152	NAC domain-containing protein 19
3swp_B	2e-48	12	145	18	152	NAC domain-containing protein 19
3swp_C	2e-48	12	145	18	152	NAC domain-containing protein 19
3swp_D	2e-48	12	145	18	152	NAC domain-containing protein 19
4dul_A	2e-48	12	145	15	149	NAC domain-containing protein 19
4dul_B	2e-48	12	145	15	149	NAC domain-containing protein 19
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.3709	0.0	leaf\| trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021997237.1	1e-97	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-81	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2U1P733	1e-107	A0A2U1P733_ARTAN; NAC domain containing protein 83
STRING	XP_010090688.1	4e-88	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	4e-84	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]