PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010287
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 163aa    MW: 18566.3 Da    PI: 9.8106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54997080PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-099391748
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++ G++ W++++++ g+ R++k+c++rw +yl
        Aan010287  9 RKKGPR-WSSVPKHAGLQRCGKSCRLRWINYL 39
                     677877.***********************97 PP
2Myb_DNA-binding49.11.3e-154589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ 
        Aan010287 45 RGLFSQQEEDLILHLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNSC 89
                     7889******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.931139IPR017930Myb domain
SMARTSM0071723541IPR001005SANT/Myb domain
CDDcd001670.00282539No hitNo description
PfamPF002495.9E-8839IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-15946IPR009057Homeodomain-like
SuperFamilySSF466892.55E-2225100IPR009057Homeodomain-like
PROSITE profilePS5129425.3634094IPR017930Myb domain
SMARTSM007171.6E-144492IPR001005SANT/Myb domain
PfamPF002491.8E-144589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-264795IPR009057Homeodomain-like
CDDcd001671.36E-104887No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
LACTFVCLRK KGPRWSSVPK HAGLQRCGKS CRLRWINYLR PDLKRGLFSQ QEEDLILHLH  60
QVLGNRWAQI AAQLPGRTDN EIKNYWNSCL KKKLIKQGID PNTHKPVSDN NDVKDKKMEF  120
FSSCSSSMPM TAELDQSYHI NNGGLILSSS SSMENNPVRV DPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2489419105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-2489442128MYB TRANSFORMING PROTEIN
1mse_C3e-2489419105C-Myb DNA-Binding Domain
1msf_C3e-2489419105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739361.15e-83transcription repressor MYB6-like
SwissprotQ8LPH61e-51MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A2U1NGA01e-100A0A2U1NGA0_ARTAN; Homeodomain-like protein
STRINGXP_008348427.19e-61(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.13e-54myb domain protein 50