PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan010395

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 160aa MW: 17296.9 Da PI: 10.2773

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55094117	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-8310	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	61.8	1.5e-19	79	159	1	84
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lL cA+av+++d++ a+ lL++++e+asp+gd mqRla+yf +L+ar+a+s++e+yk++ +++ + +++l+a++l+ Aan010395 79 LRTLLSLCAQAVAANDQRGANDLLKQIREHASPSGDGMQRLAHYFSAGLEARMAGSGDEIYKTCLSKPLA---AVDVLKAYHLL 159 5789999********************************************************9999998...77777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	15.196	53	160	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-17	79	159	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
EKTHIRKILL GYGRVTKQSA VYTEPTVRSK MFDDVLLCSG ANNLLQGNFV PNGAARVQQK 60 SNVGKGRGKR GAKKDVVDLR TLLSLCAQAV AANDQRGAND LLKQIREHAS PSGDGMQRLA 120 HYFSAGLEAR MAGSGDEIYK TCLSKPLAAV DVLKAYHLLS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021973808.1	3e-78	scarecrow-like protein 30
Refseq	XP_021973809.1	3e-78	scarecrow-like protein 30
Swissprot	Q9XE58	9e-39	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2U1PJY8	5e-95	A0A2U1PJY8_ARTAN; Transcription factor GRAS
TrEMBL	A0A2U1PJZ1	4e-95	A0A2U1PJZ1_ARTAN; Transcription factor GRAS
STRING	Solyc05g053090.1.1	2e-49	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	4e-36	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]