PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010740
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HSF
Protein Properties Length: 150aa    MW: 17674.4 Da    PI: 11.016
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55190828PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.1e-3127916102
                   TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  16 keliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   ++++sws+ng+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ +          weF+++ F kgk+++l++ikr+k+
     Aan010740   2 DHIVSWSRNGQSFVVWDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDI---------WEFANEGFIKGKRNNLKNIKRRKT 79 
                   79************************************************9876.........**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.7E-40177IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-28277IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-31277IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-28277IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-112638IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402751IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-113951IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
VDHIVSWSRN GQSFVVWDPH AFSTNLLPRY FKHNNFSSFV RQLNTYGFRK IDPDIWEFAN  60
EGFIKGKRNN LKNIKRRKTL SQPPVPQQVV SPCVEVGKYG IDGEVKRLKR DKQILMMELV  120
KLRQQQQNTR AHLQAMELRI QGTEKKQPKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-1918218110Heat shock factor protein 2
5d8l_B3e-1918218110Heat shock factor protein 2
5d8l_D3e-1918218110Heat shock factor protein 2
5d8l_F3e-1918218110Heat shock factor protein 2
5d8l_H3e-1918218110Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022035037.12e-89heat stress transcription factor A-2b
SwissprotQ6VBB29e-69HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A2U1PMN31e-101A0A2U1PMN3_ARTAN; Heat shock transcription factor A6B
STRINGGorai.004G076900.19e-83(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-55heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]