PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010798
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family B3
Protein Properties Length: 148aa    MW: 17060.2 Da    PI: 4.955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55033778PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-11997194
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
               ffkvl   d ++ + l lp +f++++ ++k  +k+ ++++ +g   W+vk+  +k ++ y +  GW + vk+  L  gDf+vF l++  +f+++v
  Aan010798  9 FFKVL--VDPFAPN-LPLPPDFVTSYFKNK-IPKDPIIQTVNGeYAWRVKI--KKVGEIYCFDHGWHNVVKDVALGYGDFIVFWLIDACTFKMLV 97
               66777..6667776.99*********5553.67778888877759******..999999***************************999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-146103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.5876101IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-186108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-10799No hitNo description
PfamPF023621.4E-9997IPR003340B3 DNA binding domain
SMARTSM010191.5E-89101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
XSAWMHPSFF KVLVDPFAPN LPLPPDFVTS YFKNKIPKDP IIQTVNGEYA WRVKIKKVGE  60
IYCFDHGWHN VVKDVALGYG DFIVFWLIDA CTFKMLVYSP DGCEKDLPPK VKVEDYDDGL  120
VQDDDDDDPM FKTIIIKSHE VRLRLPGX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022007255.16e-48B3 domain-containing protein REM14-like
TrEMBLA0A2U1KBA64e-83A0A2U1KBA6_ARTAN; DNA-binding pseudobarrel domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.14e-10B3 family protein