PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010878
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NAC
Protein Properties Length: 146aa    MW: 17170.8 Da    PI: 9.7766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55200771PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.19.4e-292095177
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77
               lppGfrFhPtdee+v++yL++kv ++++++  +i evd++k+ePwdLp+k+k +ekew+fF++rd+ky+tg r+n+ 
  Aan010878 20 LPPGFRFHPTDEEIVTHYLTPKVVNRRFSA-CAIGEVDLNKCEPWDLPEKAKMGEKEWFFFCQRDRKYPTGMRTNQL 95
               79*************************999.67***************99999*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-311794IPR003441NAC domain
PROSITE profilePS5100526.76220146IPR003441NAC domain
PfamPF023654.6E-132188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEGGSSSMVV NEGDDALVGL PPGFRFHPTD EEIVTHYLTP KVVNRRFSAC AIGEVDLNKC  60
EPWDLPEKAK MGEKEWFFFC QRDRKYPTGM RTNQLFFYAF ISSRRIRRKK PQYIAKINLL  120
NKNRITLQHA VRASWKPSEE VQWCRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2715941089Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024985991.11e-56NAC domain-containing protein 87-like
SwissprotQ9FK442e-43NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2U1Q8142e-62A0A2U1Q814_ARTAN; No apical meristem (NAM) protein
STRINGGorai.007G267700.13e-48(Gossypium raimondii)
STRINGXP_002525465.14e-48(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.24e-46Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]