PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan010936
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 144aa    MW: 16194.2 Da    PI: 6.6302
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55032245PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.32.9e-0991113427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C f++r G+C+ Gd+C+F Hgp
  Aan010936  91 VPCYFYLR-GFCSKGDTCSFLHGP 113
                69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.864837IPR000571Zinc finger, CCCH-type
SMARTSM003560.69836IPR000571Zinc finger, CCCH-type
PfamPF156631.1E-91164No hitNo description
PROSITE profilePS5010310.3333965IPR000571Zinc finger, CCCH-type
SMARTSM0035684164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-787112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.50787114IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-688113IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-691113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-592113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEEEEIIRKG FTDCVYFLAS PLTCKKGIEC EYRHCEVARL NPRDCWYWLS ACCYNPECAF  60
RHPPLDGLQE AYHEPPNLNN GPALPVDKTN VPCYFYLRGF CSKGDTCSFL HGPAAISVTN  120
EVPCEKKLSV ATNAGSKPVR SHPX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024960759.11e-68LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 34-like
SwissprotQ6K9772e-40C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2U1PJS11e-102A0A2U1PJS1_ARTAN; Uncharacterized protein
STRINGEOY310054e-51(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-08C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]