PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan011103
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YC
Protein Properties Length: 139aa    MW: 15863.1 Da    PI: 10.0196
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55080658PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-136474PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.31.5e-17998997
      NF-YC  9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
               q +++t     ++P  rik+i+k d++++++ +ea  l+s+a elf+  l+ +s   a e+kr+t+k   i  av+r + + dfl+d  p
  Aan011103  9 QQQEETTHSTSTFPTGRIKRIIKLDNEINKVNSEALFLISNATELFVKFLAEKSSQVAIEKKRKTIKLEHIRVAVKRHQpTADFLLDSLP 98
               455556667889***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.34E-201498IPR009072Histone-fold
PfamPF008082.2E-192083IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.0E-212198IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MADLEETQQQ QEETTHSTST FPTGRIKRII KLDNEINKVN SEALFLISNA TELFVKFLAE  60
KSSQVAIEKK RKTIKLEHIR VAVKRHQPTA DFLLDSLPVP VPVESKSEQV KKKSDESSKD  120
VPPPPKGSRR IDYFFKKDS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.31170.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024990436.16e-53chromatin accessibility complex protein 1
TrEMBLA0A2U1Q6204e-82A0A2U1Q620_ARTAN; Histone-fold
STRINGscaffold_800743.13e-44(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-38nuclear factor Y, subunit C13