PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan011200
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 136aa    MW: 14874.4 Da    PI: 10.3282
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936154PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.2e-17741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Aan011200  7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
               ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-8155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-12445No hitNo description
CDDcd002021.78E-14640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-13740IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.3E-15741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGKKGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLVNYFPLQS RSEREMFEDR  60
RVSKVKTISL KNKEAKLLKR KGSFENVVGG SSSILGCGSG GVLTPSHHHH HHPXIFMGLD  120
EDTSNRSSSG SAISNX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024961421.11e-55GATA transcription factor 26-like
SwissprotQ8W4H18e-37GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2U1QLV23e-77A0A2U1QLV2_ARTAN; Zinc finger, GATA-type
STRINGXP_009772103.16e-48(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-39GATA transcription factor 26