PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan011507
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 126aa    MW: 14402.8 Da    PI: 9.9872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55013457PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++ +G+g +W + +++ g++R++k+c++rw++yl
        Aan011507 14 KGPWSPEEDTRLKEYIHTHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79**********************************************7 PP
2Myb_DNA-binding35.71.9e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed+ +  +++  G++ W+  a+ ++ gRt++++k++w++
        Aan011507  69 GEFSDDEDKVICALFASIGSR-WSIMAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.176966IPR017930Myb domain
SuperFamilySSF466892.63E-2611109IPR009057Homeodomain-like
SMARTSM007174.3E-121364IPR001005SANT/Myb domain
PfamPF002498.2E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241569IPR009057Homeodomain-like
CDDcd001678.25E-91662No hitNo description
PROSITE profilePS5129414.2767117IPR017930Myb domain
SMARTSM007179.6E-1067115IPR001005SANT/Myb domain
PfamPF002498.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2370117IPR009057Homeodomain-like
CDDcd001671.84E-670111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTRLKEYIH THGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGE FSDDEDKVIC ALFASIGSRW SIMAAQLPGR TDNDIKNYWN TKLKKKMMMM  120
NTIVSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767800.13e-82transcription factor RAX2-like
SwissprotQ9FKL21e-72MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2U1Q7M67e-90A0A2U1Q7M6_ARTAN; Homeodomain-like protein
STRINGGorai.013G269300.13e-78(Gossypium raimondii)
STRINGEOY342878e-78(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-70myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]