PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan011841
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family Dof
Protein Properties Length: 115aa    MW: 12714.2 Da    PI: 9.5196
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54974217PU_refUnigeneView CDS
PUT-183a-Artemisia_annua-73155PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.62.3e-371368358
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58
               +++l+cprCds+ntkfCyynny+lsqPr++Ck+CrryWtkGG+lr +P+Ggg rk 
  Aan011841 13 HEKLNCPRCDSANTKFCYYNNYNLSQPRHYCKNCRRYWTKGGTLRKIPIGGGVRKG 68
               6899**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-21557IPR003851Zinc finger, Dof-type
PfamPF027011.3E-321468IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.821670IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101854IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MQQNQNHLQF PEHEKLNCPR CDSANTKFCY YNNYNLSQPR HYCKNCRRYW TKGGTLRKIP  60
IGGGVRKGGS KRVKPSADVA EDNIPVKTEE GESTSGGGGL NFGLSIFGSS GSKVD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426477.13e-35dof zinc finger protein DOF3.1
SwissprotO821556e-36DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2U1PGT04e-55A0A2U1PGT0_ARTAN; Dof zinc finger protein DOF3.1
STRINGXP_006426477.11e-34(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.16e-30DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]