PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013097
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family HB-other
Protein Properties Length: 259aa    MW: 28975 Da    PI: 5.8956
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55182574PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-58714PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-1051881954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54
               Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Aan013097 51 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 88
               665559******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.5682992IPR001356Homeobox domain
SMARTSM003891.2E-93296IPR001356Homeobox domain
CDDcd000861.87E-123293No hitNo description
SuperFamilySSF466895.13E-183399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-293598IPR009057Homeodomain-like
PfamPF059209.2E-194988IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
RVSKTPRLKL LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  60
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ EGKEEVGDQL QDEDQDIIDQ  120
ETNKSDTNIN YNNNNQQHKT NGPSSSSSSS ALAQTSMPPP PPQPPATTPT SAKRSEINDS  180
DYDASNHAIN MQKCLAENQA TPPGNTSNVP PSFQADADMG STLISFGTNT GDVSLTLGLR  240
HAGNIPEKDS FSVRDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-173896563Homeobox protein Meis2
3k2a_B4e-173896563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973578.11e-105BEL1-like homeodomain protein 4
SwissprotQ9SW805e-77BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2U1MD200.0A0A2U1MD20_ARTAN; TALE protein
STRINGAquca_010_00398.19e-88(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.28e-64BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]