PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013145
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family YABBY
Protein Properties Length: 247aa    MW: 27594.4 Da    PI: 8.4306
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55030726PU_unrefUnigeneView CDS
gnl|UG|Aan#S55099630PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-94623PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY215.91.3e-66291946170
      YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshld..es..lkeelleelkveeenlksnvekeesastsvssekl 101
                 ++q+Cyv+C++C+t lavsvP tslfk+vtvrCGhCtsll +++   + + +++++++  ++  + ++ +  l ++  n  sn  +++   ++ s +  
  Aan013145  29 CADQLCYVHCTHCDTTLAVSVPCTSLFKTVTVRCGHCTSLLPMSMPGLM-MPPSMNQFHfgHNnfFSPSTQTLLDDQIPNGGSNFLTNRDYANDFSLT-- 125
                689***************************************9876654.445555433002211333444444555556666666666666655553.. PP

      YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +   +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl
  Aan013145 126 ARGGFRELPKPPVTNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 194
                578899****999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-6530194IPR006780YABBY protein
SuperFamilySSF470955.89E-8138187IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.0E-4142188IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSISSSTTSP TVPQLLLHHH HNHLPPPSCA DQLCYVHCTH CDTTLAVSVP CTSLFKTVTV  60
RCGHCTSLLP MSMPGLMMPP SMNQFHFGHN NFFSPSTQTL LDDQIPNGGS NFLTNRDYAN  120
DFSLTARGGF RELPKPPVTN RPPEKRQRVP SAYNRFIKEE IQRIKAGNPD ISHREAFSAA  180
AKNWAHFPHI HFGLMPDQTS AVNKSSMRQQ DHMADGGFMK DGFFVFCKCG CLSFLASYLG  240
YKPNSYF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}.
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729890.11e-135axial regulator YABBY 5-like
SwissprotQ01JG23e-64YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF03e-64YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2U1MGI91e-145A0A2U1MGI9_ARTAN; High mobility group (HMG) box domain-containing protein
STRINGVIT_02s0154g00070.t018e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-61YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]