PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013178

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HSF

Protein Properties

Length: 270aa MW: 31170 Da PI: 7.3771

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41962141	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-2201	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.3	3.3e-35	25	116	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d++++e++sws+++nsfvv+++ efa+ +Lp yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k+kk+ll++i+ Aan013178 25 FLLKTYEMVDDNTTDEIVSWSTRENSFVVWNPPEFARVLLPMYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFLKDKKHLLKNIH 112 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Aan013178 113 RRKP 116 *985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.04E-35	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.9E-58	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.3E-38	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.0E-19	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-30	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.0E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MDPNPPSSST TTTTTTGGGG GPAPFLLKTY EMVDDNTTDE IVSWSTRENS FVVWNPPEFA 60 RVLLPMYFKH NNFSSFIRQL NTYGFRKIDP EKWEFANEDF LKDKKHLLKN IHRRKPVHSH 120 STPQTSTVDP ERAAFEEEIE KLTREKTSLE KNLLRYKQQQ PASKLQLEDL TQRVNSMEQR 180 QENLLTFLKK AARNPEFVEH LAQKLESMDF SADNKKRRLP KSRIFPEDGV VDNHSPQSPS 240 RPDFGNVSHH EFFGQLRLEL SPAVSDINVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	18	114	19	129	Heat shock factor protein 1
5d5v_B	2e-21	18	114	19	129	Heat shock factor protein 1
5d5v_D	2e-21	18	114	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024984431.1	1e-153	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-100	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A2U1QL96	1e-170	A0A2U1QL96_ARTAN; Heat shock factor (HSF)-type, DNA-binding
STRING	XP_004298212.1	1e-126	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-102	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]