PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan013617
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 212aa    MW: 23392.3 Da    PI: 4.7293
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55026442PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-144777PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-144778PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.27e-735210172374
       GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                ++v+fe++ +va++l+dle+ +++++ +E++aVn+v++lhrll +++++e+    vL++vk+l+P +++vveqea+hn+  Fl+rf+e+l+yys+lfdsl
  Aan013617   5 INVEFEYRGFVANSLADLEPGMFDLRDDEVVAVNSVFELHRLLGRPMAVEK----VLDVVKGLKPVILTVVEQEANHNGLVFLDRFTESLHYYSTLFDSL 100
                89*****************************************99999999....********************************************* PP

       GRAS 272 eak......lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkd 364
                e++         +se+++ +++++lg++i+nvvaceg +r+erhetl +W+ rl++aGF++v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++
  Aan013617 101 ESSgggsggGEGASEQDKIMSEVYLGKQICNVVACEGMDRVERHETLTQWKTRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHT 200
                9885666544445699************************************************************************************ PP

       GRAS 365 rpLvsvSaWr 374
                rpL+++SaW+
  Aan013617 201 RPLITTSAWK 210
                *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.0891189IPR005202Transcription factor GRAS
PfamPF035142.4E-705210IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
XVSLINVEFE YRGFVANSLA DLEPGMFDLR DDEVVAVNSV FELHRLLGRP MAVEKVLDVV  60
KGLKPVILTV VEQEANHNGL VFLDRFTESL HYYSTLFDSL ESSGGGSGGG EGASEQDKIM  120
SEVYLGKQIC NVVACEGMDR VERHETLTQW KTRLDSAGFE AVHLGSNAFK QASMLLALFA  180
GGDGYRVEEN NGCLMLGWHT RPLITTSAWK LK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2815209195378Protein SCARECROW
5b3h_A7e-285209185377Protein SCARECROW
5b3h_D7e-285209185377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742265.11e-125DELLA protein GAI1-like
SwissprotQ8S4W71e-110GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K0M6F51e-147A0A0K0M6F5_ARTAN; DELLA2 protein
TrEMBLA0A1B0T6S01e-149A0A1B0T6S0_CHRMO; GRAS protein (Fragment)
STRINGPOPTR_0008s13090.11e-115(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-107GRAS family protein