PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013639

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

bZIP

Protein Properties

Length: 271aa MW: 30075.2 Da PI: 7.5042

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55039526	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-435160994	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	76	132	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l s Aan013639 76 KRAKRILANRQSAARSKERKARYMSELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 132 9*****************************************998877666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.2E-16	72	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	74	137	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.5E-10	76	131	No hit	No description
SuperFamily	SSF57959	5.06E-11	76	127	No hit	No description
Pfam	PF00170	7.6E-9	76	133	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.57E-20	77	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDIEKLQGSA SGFNEGGGLN NNNDNGNNGN ESSRPRHRHS NSVDGSSSLM MSGESIEAKK 60 AMAPEKLAEL WTLDPKRAKR ILANRQSAAR SKERKARYMS ELERKVQTLQ TEATTLSAQL 120 TLFQRDTTGL SSENTELKLR LQAMEQQAQL RDALNEALKQ EVERLRMATG EIASCSDGYN 180 LGMHHVPYNQ SNFFTNHQQQ EQPQYHHSHQ SNMSNHHHQL LAAAHAQALS ETLQQVPLGR 240 FQGLDISARG NPHMVKSEGP SISASESSST F

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737393.1	1e-135	transcription factor RF2b-like
Swissprot	Q6S4P4	9e-92	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2U1NCL6	1e-157	A0A2U1NCL6_ARTAN; Transcription factor RF2b
STRING	VIT_13s0067g02900.t01	1e-124	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-84	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]