PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan013805

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB

Protein Properties

Length: 363aa MW: 40479.2 Da PI: 6.5074

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41970508	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-135694	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	9e-08	9	39	18	48
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 + G g+W++ ++ g++R++k+c++rw +yl Aan013805 9 RNGHGSWRALPSLAGLNRCGKSCRLRWTNYL 39 67999************************97 PP
2	Myb_DNA-binding	56.6	5.9e-18	45	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Aan013805 45 RGNFTEDEEKLIIHLHSHLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 90 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	67	1	41	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.458	8	39	IPR017877	Myb-like domain
Pfam	PF00249	2.5E-6	8	39	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-14	9	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-22	25	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	27.63	40	94	IPR017930	Myb domain
SMART	SM00717	4.1E-17	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-17	45	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-27	47	94	IPR009057	Homeodomain-like
CDD	cd00167	4.62E-13	47	90	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
XREVVVNERN GHGSWRALPS LAGLNRCGKS CRLRWTNYLR PDIKRGNFTE DEEKLIIHLH 60 SHLGNKWSAI ATHLPGRTDN EIKNFWNTHL KKKLLQMGID PVTHQPRTDH LDILAHLPQL 120 LAIAANNLGA TSLDLNIRDL LNPSLFDMNI TALMSHSDAT QIAKFQLLQN ILQVLSPNAP 180 TNTTSIPQNI DPFYAMQLSD YLKINPQHLQ NLQELAMNVT PSASSLPPFL THDHFRSPTY 240 QTLNLDNDQA SKGFSEQDIN RAHGVTVGKE EYLGFESVPA LVPASPEHLD QSYSGKGQSP 300 GANVNIGLGN SCNLKQKQSE HLSSSDPTST ATTIDANWPE FMDDEASGCY WKEIIERSSP 360 PWS

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

XREVVVNERN GHGSWRALPS LAGLNRCGKS CRLRWTNYLR PDIKRGNFTE DEEKLIIHLH  60
SHLGNKWSAI ATHLPGRTDN EIKNFWNTHL KKKLLQMGID PVTHQPRTDH LDILAHLPQL  120
LAIAANNLGA TSLDLNIRDL LNPSLFDMNI TALMSHSDAT QIAKFQLLQN ILQVLSPNAP  180
TNTTSIPQNI DPFYAMQLSD YLKINPQHLQ NLQELAMNVT PSASSLPPFL THDHFRSPTY  240
QTLNLDNDQA SKGFSEQDIN RAHGVTVGKE EYLGFESVPA LVPASPEHLD QSYSGKGQSP  300
GANVNIGLGN SCNLKQKQSE HLSSSDPTST ATTIDANWPE FMDDEASGCY WKEIIERSSP  360
PWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-20	26	94	40	108	B-MYB
1gv2_A	3e-20	26	94	37	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-20	26	94	37	105	C-Myb DNA-Binding Domain
1msf_C	3e-20	26	94	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750952.1	0.0	transcription factor MYB41-like
TrEMBL	A0A2U1LBV9	0.0	A0A2U1LBV9_ARTAN; Transcription factor MYB39
STRING	VIT_16s0039g01710.t01	3e-88	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	8e-79	myb domain protein 9