PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014133
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 146aa    MW: 17060.9 Da    PI: 5.9498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41950536PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-37561PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.87.8e-13934126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               y   +C+++ +tG+C yGd+CkF+H+
  Aan014133  9 YQPDICKDYKETGYCGYGDSCKFMHD 34
               67789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-10639IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7835IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878836IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10934IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-13939IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-1468136IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139204.0E-985127No hitNo description
SuperFamilySSF578501.33E-1385129No hitNo description
CDDcd001620.0014286127No hitNo description
PROSITE profilePS5008910.32186124IPR001841Zinc finger, RING-type
SMARTSM001841.9E-486123IPR001841Zinc finger, RING-type
PROSITE patternPS005180101110IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
XRVSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQMERDWDE AEKVRKRKLA  60
LKGGDDDDED EEEEIEDDED GLPFACFICR QPFVDPVVTK CKHYFCEHCA LKHHAKKKKC  120
FVCNQPTLGI FNTAHEIRKR TAAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-502145190326RING finger protein 113A
5z58_M3e-502145190326RING finger protein 113A
6ff4_t3e-502145190326RING finger protein 113A
6ff7_t3e-502145190326RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.37020.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609000.12e-90PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_016502602.12e-90PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_018628567.12e-90PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX842e-77C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2U1P6E81e-105A0A2U1P6E8_ARTAN; Zinc finger CCCH domain-containing protein 1
STRINGXP_009609000.18e-90(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.12e-67C3H family protein