PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014309
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 380aa    MW: 41099.9 Da    PI: 9.9373
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41969598PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-42105PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-68033PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18195228134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  Aan014309 195 CTHCEITKTPQWREGPMGPKTLCNACGVRYRSGR 228
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.097189225IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-17189239IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14190226IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-15190252No hitNo description
CDDcd002022.32E-15194243No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003203.4E-16195228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MNSKDNKGMC ASVENGLYGD VDLELLNVFD LPDTLEGDGC IGDWSMNLGP IPTDIFAEVP  60
AVSRVGDKIG NGNCGGDGGS MDFLSEDVKE TFKSQLKQHP STFFDERKMY RIPKSFEAPS  120
PDSVLERRIS TSTGKTKTIP LGPEITIPVK ARTNRSRPNS TSNSWSKSLL LVPLEKAKKK  180
RRVVSQLPDN ENKKCTHCEI TKTPQWREGP MGPKTLCNAC GVRYRSGRLF PEYRPAASPT  240
FIPSLHSNSH RKVIEMRQKG VGFVKKPTAA ISYPTGAGDG AFVKKPAITT ILNSAGTGDG  300
VFVKKPTTTA IPYPVEAGDG VFVKKPRTTA IPYPVVAGDG VFVKKPTTTI PFPAGAGYGV  360
FVNKPMGSIP TLTRLGSDXW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181KKKRR
2177182KKKRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983644.13e-93GATA transcription factor 11-like
TrEMBLA0A2U1NZ780.0A0A2U1NZ78_ARTAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.26e-40GATA transcription factor 11