PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan014338

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

WOX

Protein Properties

Length: 255aa MW: 28586.6 Da PI: 6.3998

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S41958427	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-595	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.2	5e-22	82	142	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Aan014338 82 RQRWTPTPVQLQILERLFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 142 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.6e-33	82	144	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+l+++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Aan014338 82 RQRWTPTPVQLQILERLFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 144 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.192	78	143	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-19	78	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-18	80	147	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-15	80	147	IPR001356	Homeobox domain
CDD	cd00086	4.77E-15	82	144	No hit	No description
Pfam	PF00046	7.9E-20	82	142	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEHDDVNNNN NNNNNNGMFV KVMTDEQMEV LRKQIAIYAT ICEQLVDLHK SLTSHHDLTG 60 VRLGNLYSDP LVTSGGHKFS GRQRWTPTPV QLQILERLFD QGNGTPSKQK IKEITSELSQ 120 HGQISETNVY NWFQNRRARS KRKQQVSAPN NGESEVETEV ESPKPQQNSA STADDNMCFQ 180 NPNVSSGITS ADQRTKKVEP IFPSDASSKP AGNVGQMSYY GSMLANPRMD HIIGKMEVSG 240 GYQPYMQNDE YNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024974243.1	1e-159	WUSCHEL-related homeobox 8-like isoform X2
Swissprot	Q5QMM3	2e-83	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2U1QHS3	1e-171	A0A2U1QHS3_ARTAN; Homeodomain-containing protein
STRING	Solyc02g082670.2.1	1e-123	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-79	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]