PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014660
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 484aa    MW: 53771.7 Da    PI: 6.7643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41953176PU_unrefUnigeneView CDS
gnl|UG|Aan#S41962876PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-88194PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-13309354454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f +Lr+++P+       K++Ka+ L  Av YI++L
  Aan014660 309 NHVEAERQRREKLNQRFYTLRSVVPNV-----SKMDKASLLADAVCYINEL 354
                699***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-3046201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-18307372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-18309371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-14309359No hitNo description
SMARTSM003533.9E-16311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
HSFNFRNQQI NPMDDDFLIL SPSSSSSIIQ QNTHTSPPTP TPQSHHKLQF LLQTQPNHPW  60
AYAILWKTTF NHDNGRPWTL TWADGYFLQN PSKPALKEIQ SLLGPDNSDD AEWFYVVSLT  120
RSFSAGDGSA PANSFASNSV IWLTGAHSLL SFDCVRAKEA HIHGLETLVY IPTTNGVVEM  180
GSFHVINHTE SDLAHRAKSL FGAGSSSSSS SSPPANNMAK QPNDDHLISF GEMGARLPQE  240
EESMNIIDFG TITFDQQPKK LGKIVKNMNM KGNEVSETGS EESDSDCQLV VATSKKVGQK  300
KKGRDPPINH VEAERQRREK LNQRFYTLRS VVPNVSKMDK ASLLADAVCY INELKGKVEE  360
LEAQLQATNN QPKLKKIKIE IPDVTIVPKS NGAKIYNKKT QTKMIENLEV EVKMVGEDAM  420
IRVQSGNGDW PAAKLMDALR EMEVKVHHAS MSCVNDIMLQ DVVARITGST EDEVKSHLLA  480
RLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-264520110192Transcription factor MYC3
4rqw_B3e-264520110192Transcription factor MYC3
4rs9_A3e-264520110192Transcription factor MYC3
4yz6_A3e-264520110192Transcription factor MYC3
5gnj_A2e-26303381278Transcription factor MYC2
5gnj_B2e-26303381278Transcription factor MYC2
5gnj_E2e-26303381278Transcription factor MYC2
5gnj_F2e-26303381278Transcription factor MYC2
5gnj_G2e-26303381278Transcription factor MYC2
5gnj_I2e-26303381278Transcription factor MYC2
5gnj_M2e-26303381278Transcription factor MYC2
5gnj_N2e-26303381278Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021969708.10.0transcription factor MYC2-like
TrEMBLA0A2U1PZ400.0A0A2U1PZ40_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain, Transcription factor MYC/MYB N-terminal
STRINGevm.model.supercontig_141.191e-118(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-59bHLH family protein