PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014664
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 380aa    MW: 41863.1 Da    PI: 6.059
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41970286PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-80160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07318338526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f + G C++Gd C +aHg
  Aan014664 318 PCPDFKK-GACRRGDMCEYAHG 338
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.09E-1644173IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.2E-1748186IPR020683Ankyrin repeat-containing domain
PfamPF127967.4E-1088162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006793123IPR002110Ankyrin repeat
CDDcd002042.25E-1593171No hitNo description
PROSITE profilePS5029715.96393201IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.6E-594109IPR002110Ankyrin repeat
PROSITE profilePS5008811.915128163IPR002110Ankyrin repeat
SMARTSM002484.1E-4128160IPR002110Ankyrin repeat
PRINTSPR014154.6E-5147161IPR002110Ankyrin repeat
SMARTSM003564.4E-6313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5316340IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5318338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638318340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4346376IPR000571Zinc finger, CCCH-type
SMARTSM0035678348371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MCSGPEENNN NNNNNTASSS TELTDKTDKE KSNKMVMSPL TVETGDSFSS LLEYAANNDF  60
EGFKRSIEND DSGIDEVGLW YVRKKGSKQI GLEHRTPLMV AATYGSLSVL KLIVEKSKVD  120
VNFACGPDKC TALHCAASGG SVDAVEVVKV LLSVGADPNI EDVNGHRPVD VIIVPPKLSG  180
VRASLEEMLM SNASDGSLGD CKLTVSVATS SSWSPTLSSS PENGSPCSPS ELVSSPTMSK  240
FNETPVNYTS EKKEYPIDPS LPDIKNSIYS TDEFRMFSFK VRPCSRAYSH DWTECPFVHP  300
GENARRRDPR KYHYSCVPCP DFKKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC  360
ARRVCFFAHL PEELRPLYVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024982739.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_024982740.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-162C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2U1LTN10.0A0A2U1LTN1_ARTAN; Uncharacterized protein
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-161CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]