PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014755
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NAC
Protein Properties Length: 262aa    MW: 29400.1 Da    PI: 9.2223
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41933161PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-15027PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50141471128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 
                lppGfrFhPtdeelvv+yL++kv++++l++ ++i+evd++k++PwdLp  v   e+e +fFs+r+ ky++g+r+nrat sgyWkatg dk+++s+     
  Aan014755  14 LPPGFRFHPTDEELVVQYLRRKVHSSPLPA-SIIPEVDVCKSDPWDLPGDV---ENERFFFSTREVKYPNGNRSNRATLSGYWKATGLDKQIVSSssykt 109
                79****************************.89***************554...6799************************************988877 PP

        NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ +vg+kktLvfykg+ p+g +tdWvmheyrl
  Aan014755 110 snnnqQEVVVGMKKTLVFYKGKPPSGARTDWVMHEYRL 147
                765544444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5910170IPR003441NAC domain
PROSITE profilePS5100556.25414170IPR003441NAC domain
PfamPF023654.6E-2715147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDKVNFVKNG VLRLPPGFRF HPTDEELVVQ YLRRKVHSSP LPASIIPEVD VCKSDPWDLP  60
GDVENERFFF STREVKYPNG NRSNRATLSG YWKATGLDKQ IVSSSSYKTS NNNQQEVVVG  120
MKKTLVFYKG KPPSGARTDW VMHEYRLASQ PKSQTTQGAE NWVLCRIFLK KRGNKKEEEK  180
EYKETIIEVG GNVVTNNNVE MKPKMKPVFY DFLATISTRK EKTGDLNLVP AYSSSGSSGI  240
TEATACGNGS GEDETSDHVS SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-491217615171NO APICAL MERISTEM PROTEIN
1ut4_B4e-491217615171NO APICAL MERISTEM PROTEIN
1ut7_A4e-491217615171NO APICAL MERISTEM PROTEIN
1ut7_B4e-491217615171NO APICAL MERISTEM PROTEIN
3swm_A4e-491217618174NAC domain-containing protein 19
3swm_B4e-491217618174NAC domain-containing protein 19
3swm_C4e-491217618174NAC domain-containing protein 19
3swm_D4e-491217618174NAC domain-containing protein 19
3swp_A4e-491217618174NAC domain-containing protein 19
3swp_B4e-491217618174NAC domain-containing protein 19
3swp_C4e-491217618174NAC domain-containing protein 19
3swp_D4e-491217618174NAC domain-containing protein 19
4dul_A4e-491217615171NAC domain-containing protein 19
4dul_B4e-491217615171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.14790.0leaf| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023741761.11e-117NAC domain-containing protein 83-like
SwissprotQ9FY931e-95NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2U1PV640.0A0A2U1PV64_ARTAN; NAC domain-containing protein 83
STRINGPOPTR_0001s13380.11e-107(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]