PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014830
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 135aa    MW: 16062.1 Da    PI: 8.9015
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-89728PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS128.29.4e-407132248373
       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                ++++ F++rf eal +ysalfd+++a++ r++e+r+++E+ ++gre++nv+aceg er+er et+++W+ r+++aGFk+ +++ ++ +q k+ ++  + +
  Aan014830   7 YGAPFFVTRFKEALFHYSALFDMFDATIDRDNEQRQNYEKSFFGREVMNVIACEGHERVERPETYKQWQVRISRAGFKARHVDREIFSQLKSKVKIRYHK 106
                67889******************************************************************************************99988 PP

       GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                 + ++++ +++++gWk+r L +vS+W
  Aan014830 107 DFVLDDDGKWMLQGWKGRILCAVSCW 132
                8************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.0811113IPR005202Transcription factor GRAS
PfamPF035143.3E-377132IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
XCLYGSYGAP FFVTRFKEAL FHYSALFDMF DATIDRDNEQ RQNYEKSFFG REVMNVIACE  60
GHERVERPET YKQWQVRISR AGFKARHVDR EIFSQLKSKV KIRYHKDFVL DDDGKWMLQG  120
WKGRILCAVS CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-1312134259380Protein SCARECROW
5b3h_A4e-1312134258379Protein SCARECROW
5b3h_D4e-1312134258379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021970463.12e-71scarecrow-like protein 33
SwissprotP0C8842e-57SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A2U1L8B83e-92A0A2U1L8B8_ARTAN; GRAS protein
STRINGMigut.D02079.1.p1e-62(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.18e-60GRAS family protein