PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014865
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 236aa    MW: 25381.4 Da    PI: 8.5799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-83968PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0658701527
               -TTTTT-SS-SSS CS
    zf-CCCH 15 CkyGdrCkFaHgp 27
               C +Gd+C+FaH++
  Aan014865 58 CTFGDKCRFAHSE 70
               ***********95 PP
2zf-CCCH36.48.8e-12206230227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C++f++ G+C +GdrC+FaHg+
  Aan014865 206 KTKMCDNFLK-GQCTFGDRCHFAHGE 230
                899*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.77E-74373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7744371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-94473IPR000571Zinc finger, CCCH-type
SMARTSM003560.584570IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.11E-15103181IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.1E-16109179IPR004088K Homology domain, type 1
SMARTSM003221.3E-10110180IPR004087K Homology domain
PROSITE profilePS5008414.11111175IPR004088K Homology domain, type 1
PfamPF000139.3E-10113177IPR004088K Homology domain, type 1
CDDcd001053.39E-13113176No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15203234IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7204230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9204234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539204231IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8206230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
EGCHFSHYIP GGYNAASQFT NMGGPISRKP PMQQPFTDGP ATPMKSKLCN RINTPEGCTF  60
GDKCRFAHSE AEMGGGRPSF SSYENPRGPM NFSGYQGRFE PSPAAANFGQ SATAKISIES  120
SLAGPVIGKG GINSKQICRV TGVKLHVRDH ETDPNQKNIE LEGSFDQIKE ASAMVQEIIM  180
NLGGANGGRK GGGFQQQQSG GRNNIKTKMC DNFLKGQCTF GDRCHFAHGE NELRNG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192GGRKGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024962930.11e-108zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-83C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2U1P3S61e-172A0A2U1P3S6_ARTAN; K Homology domain-containing protein
STRINGXP_008805470.13e-86(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-53C3H family protein