PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014879
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29748.2 Da    PI: 9.6375
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41919880PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-31528PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.7e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien+  rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye+ss
  Aan014879  9 KRIENTASRQVTFSKRRNGLLKKAYELSVLCDAEVALMIFSQKGKLYEFSS 59
               79***********************************************96 PP
2K-box53.21.2e-181432053597
      K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 R++lG+dL s+sl eL +L ++Le+ l++iR++K +l++eqi++l+ ke+ l een +L ++
  Aan014879 143 ARKFLGQDLVSCSLDELSELDSKLEHTLRTIRARKAQLFKEQIDKLKAKERYLLEENARLCQE 205
                69********************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.324161IPR002100Transcription factor, MADS-box
CDDcd002651.61E-41372No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-32377IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.96287215IPR002487Transcription factor, K-box
PfamPF014863.3E-18143205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRGKVELKR IENTASRQVT FSKRRNGLLK KAYELSVLCD AEVALMIFSQ KGKLYEFSSS  60
NMQKTIEKYR EHVKKDENCN PEMEVNTQQL KDEAAIIQQK IEQLEAAQRF FLRHYFPLRP  120
IXLAFYPFLG ILLSTLKLDF MMARKFLGQD LVSCSLDELS ELDSKLEHTL RTIRARKAQL  180
FKEQIDKLKA KERYLLEENA RLCQENKSLS QKRVVNPPQQ HSMKQKDVVT CSHASSQFSD  240
VETELFVGLR LYQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20172172MEF2C
5f28_B4e-20172172MEF2C
5f28_C4e-20172172MEF2C
5f28_D4e-20172172MEF2C
6byy_A4e-20178178MEF2 CHIMERA
6byy_B4e-20178178MEF2 CHIMERA
6byy_C4e-20178178MEF2 CHIMERA
6byy_D4e-20178178MEF2 CHIMERA
6bz1_A4e-20178178MEF2 CHIMERA
6bz1_B4e-20178178MEF2 CHIMERA
6bz1_C4e-20178178MEF2 CHIMERA
6bz1_D4e-20178178MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.86870.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753340.11e-113MADS-box protein AGL42-like isoform X3
SwissprotQ9FIS12e-69AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2U1QBW41e-147A0A2U1QBW4_ARTAN; GSOC1 protein
STRINGMigut.F01157.1.p3e-71(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-60AGAMOUS-like 42