PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan014933
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 281aa    MW: 31745.2 Da    PI: 8.4745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41903512PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-139059PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-1470121155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Aan014933  70 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 121
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-1468124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1668137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-1368125No hitNo description
PROSITE profilePS5088815.3769120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1170121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1075126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
EIMSSNSSLA TTTEKMSMAV QAYCGGKNPE KNYCDNNHNN KSIHNNLGVQ KKKRRRRPRV  60
CKNKEEAESQ RMTHIAVERN RRKQMNEHLA VLRSLMPESY VQRGDQASIV GGAIEFVKEL  120
EHLLQSLEAK KFVMTQQPQE DDDNGGHDSN FTKLSSAAPP FSQFFSYPQY TCSQIPNKYT  180
SKSKAAIADI EVTLIETHAN LRILSQKRLA QLSKMVACFQ TLYLSVLHLH VTTMEPLVLY  240
SISVKVEEGC RLNSADEIAG AVHQMLRIIE EEATLCVVDS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14955QKKKRRR
25055KKKRRR
35056KKKRRRR
45156KKRRRR
57081RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.38800.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021969358.11e-155transcription factor bHLH94-like
SwissprotQ9C7T41e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2U1N1360.0A0A2U1N136_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGSolyc08g076820.2.11e-122(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]