PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015086
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28244.5 Da    PI: 9.9579
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S54989264PU_unrefUnigeneView CDS
gnl|UG|Aan#S55203946PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-87631PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  Aan015086  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59
               79***********************************************86 PP
2K-box96.93.2e-32821748100
      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + e++++ s++ e++kL+++ie L+++++h++GedLe+Lsl+eLq++eqq+e++lk+iR++Kn++++e+i++l kke++lqe+n++L+kkl+e
  Aan015086  82 APETETQGSWTLESSKLRAKIEVLEKNIKHYVGEDLEPLSLRELQSVEQQIETALKRIRTRKNQVMHESISNLHKKERALQEQNNTLSKKLKE 174
                456777899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.721161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-33291IPR002100Transcription factor, MADS-box
CDDcd002652.43E-40276No hitNo description
PRINTSPR004042.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-2785172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.25688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH  60
SSMEAILERY ERYSYAEKLL TAPETETQGS WTLESSKLRA KIEVLEKNIK HYVGEDLEPL  120
SLRELQSVEQ QIETALKRIR TRKNQVMHES ISNLHKKERA LQEQNNTLSK KLKENDKNIE  180
ERNAGLLLPP PQPQLLPPPP QPPYSLAPLV IGSGSFQGAA AIREDDPAQT HTMSATMMPA  240
WLLRHMNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-21174173MEF2 CHIMERA
6byy_B1e-21174173MEF2 CHIMERA
6byy_C1e-21174173MEF2 CHIMERA
6byy_D1e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973657.11e-148truncated transcription factor CAULIFLOWER A-like
SwissprotQ424294e-97AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2U1LZQ20.0A0A2U1LZQ2_ARTAN; Floral-meristem protein
STRINGXP_004304203.11e-107(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]