PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015101
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 367aa    MW: 40836.9 Da    PI: 5.6716
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41945441PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-84459PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.2e-07445540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +C+ + e +   +C++++ +lC +C  ++H+       H+++
  Aan015101  4 NCDYCREARSMVYCRSDEAYLCLSCDRNIHSAnalskrHSRT 45
               6*****************************656777778765 PP
2zf-B_box20.21.2e-064686439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                +C++++++++   C d +  lC++C  e H+g     H+ 
  Aan015101 46 LICDKCNSQPAYVRCVDEKLSLCQNCDWECHNGsnsssHSK 86
               68**************************99*8888888875 PP
3CCT60.94.2e-21310353144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a+lRYkeK+k+RkF+K++rY++RKa+A+ R+RvKGrFvk+ 
  Aan015101 310 RNNAVLRYKEKKKNRKFDKRVRYATRKARADVRKRVKGRFVKAG 353
                99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798547IPR000315B-box-type zinc finger
CDDcd000215.79E-7547No hitNo description
SMARTSM003365.5E-7547IPR000315B-box-type zinc finger
PROSITE profilePS501198.7454389IPR000315B-box-type zinc finger
CDDcd000214.21E-44774No hitNo description
SMARTSM003360.74889IPR000315B-box-type zinc finger
PfamPF062033.8E-16310352IPR010402CCT domain
PROSITE profilePS5101715.309310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGYNCDYCRE ARSMVYCRSD EAYLCLSCDR NIHSANALSK RHSRTLICDK CNSQPAYVRC  60
VDEKLSLCQN CDWECHNGSN SSSHSKQTLN CYSGCPSADE LSSIWSFMSE SPAGNDSNCE  120
QEMGLMSITD NKNDQDLSID DVTQQVNAKD STTQKIVGTK GGDQFTNDRF YDDFTMDEVD  180
LSIENYEELF GEGHNDPKHL FAKDGIDSLF AAKDTSVAES VCHGAYAAKE SSTGAQPAYS  240
NAASADSLRS CKTEPNPCYG RQYSNISFSN LTGESTAGDY QDCGASSMLL MGEPPWSTPA  300
HDSTTPSGIR NNAVLRYKEK KKNRKFDKRV RYATRKARAD VRKRVKGRFV KAGEAYDYDP  360
MSQTRSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021982538.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021982539.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021982540.10.0zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021982542.10.0zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-135COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2U1KES40.0A0A2U1KES4_ARTAN; B-box type zinc finger protein with CCT domain-containing protein
STRINGGLYMA13G11592.11e-156(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-111B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]