PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015244
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 308aa    MW: 32558.7 Da    PI: 9.8318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41958209PU_unrefUnigeneView CDS
gnl|UG|Aan#S41958210PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-216160994PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-598160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07104129227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                k +lC+ +     C++Gd+C++aHg+
  Aan015244 104 KSRLCSKYNTAEGCRFGDKCHYAHGE 129
                679*********************96 PP
2zf-CCCH32.81.2e-10275299126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +f + G C +Gd+C+FaHg
  Aan015244 275 FKTKLCENFTK-GSCTFGDKCHFAHG 299
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.94562No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-12100134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7101133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028102130IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5104129IPR000571Zinc finger, CCCH-type
SMARTSM003560.027104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.82E-13174248IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-13176245IPR004088K Homology domain, type 1
SMARTSM003224.0E-10176246IPR004087K Homology domain
PROSITE profilePS5008412.81177241IPR004088K Homology domain, type 1
PfamPF000134.7E-8179243IPR004088K Homology domain, type 1
CDDcd001051.33E-10179242No hitNo description
PROSITE profilePS5010316.821274301IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7274300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-8274304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-16274304IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8275299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDFGFNKKRS RPAAGANGNT GFKKSKQDTE SFQSGLGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA INPMSGGNPS LPPTVRNPVV PPSFPDGSSP PAVKSRLCSK YNTAEGCRFG  120
DKCHYAHGEW ELGKPTVPSH HEDPRSMGPP PGSRFSGAPR MGFNPPQEIA PSGFGASATT  180
KISVNAALGG PIIGKNGINS KQICRMTGVK LSVRDHESDP NLKNIELEGT FDQIKRASEM  240
VQQLIVNLTA AAGPHQQQKS FGKPGGGFGG PAGNFKTKLC ENFTKGSCTF GDKCHFAHGA  300
EELRSSGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024987081.11e-172zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-107C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2U1QEB50.0A0A2U1QEB5_ARTAN; Zinc finger CCCH domain-containing protein 14
STRINGcassava4.1_012715m1e-146(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein