PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015255

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB

Protein Properties

Length: 817aa MW: 89910.2 Da PI: 9.9546

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-380160993	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.3e-15	26	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +v+q+G++ W++I+++m + R +k+c +rw +yl Aan015255 26 RQRWQPEEDALLRAYVHQYGPKEWNLISHRMSkpLDRDPKSCLERWKNYL 75 89**********************************************97 PP
2	Myb_DNA-binding	32	2.9e-10	81	119	1	41
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k ++ Aan015255 81 KGSLTPQEQSLVISLQAKYGNK-WKKIASEVP-GRTAKAIR 119 6788****************.*****.***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.738	20	79	IPR017930	Myb domain
SMART	SM00717	2.9E-13	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.91E-22	26	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-20	28	82	IPR009057	Homeodomain-like
CDD	cd00167	1.70E-10	28	75	No hit	No description
Pfam	PF13921	3.8E-13	29	91	No hit	No description
PROSITE profile	PS51294	14.074	80	130	IPR017930	Myb domain
SMART	SM00717	8.6E-8	80	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-15	83	120	IPR009057	Homeodomain-like
CDD	cd00167	3.23E-7	85	120	No hit	No description
Gene3D	G3DSA:3.30.200.20	1.5E-35	319	446	No hit	No description
SuperFamily	SSF56112	2.02E-97	327	639	IPR011009	Protein kinase-like domain
CDD	cd07840	0	333	632	No hit	No description
PROSITE profile	PS50011	44.88	333	632	IPR000719	Protein kinase domain
SMART	SM00220	3.0E-94	333	632	IPR000719	Protein kinase domain
Pfam	PF00069	1.5E-73	333	632	IPR000719	Protein kinase domain
PROSITE pattern	PS00107	0	339	362	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:1.10.510.10	1.8E-58	447	692	No hit	No description
PROSITE pattern	PS00108	0	467	479	IPR008271	Serine/threonine-protein kinase, active site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
RVRTHIFTHS LKTQPHNYVN PNMKERQRWQ PEEDALLRAY VHQYGPKEWN LISHRMSKPL 60 DRDPKSCLER WKNYLKPGIK KGSLTPQEQS LVISLQAKYG NKWKKIASEV PGRTAKAIRK 120 VVEVFKEKQA KQQLQNSKXN NIGSSGSDIS TLQGGNISTS VGAVSGEPEK AVQGTYDHIL 180 ETFAEKYVQP YLNPASVVSV PVSLPVPVPV MPNLNSPILS LGSGAGAGSI SAPVAPDPGS 240 MVAATLPPWM SNSSASSSTT KSTTPSPSVS LTLSPSXTGG SGPGSGASTI RPPGSLPLQT 300 PVTGTLTNHG RSIDGQLNLD ESPSWGSRSV DCFEKLEQIG EGTYGQVYMA REIKTGEIVA 360 LKKIRMDNEK EGFPITAIRE IKILKKLQHD NVIKLKEIVT STGPEGDEHV KSGGHRYKGS 420 IYMVFEYMDH DLTGLADRPG MQFTIPQIKC YMKQLLTGLH YCHVNQVLHR DIKGSNLLID 480 NEGNLKLADF GLARTYSSDH KGNLTNRVIT LWYRPPELLL GATKYGPTVD MWSVGCIFAE 540 LLFGKPILTG KNEPEQITKI FELCGSPDEI IWPGVSRLPL YNKFKSPRPM KRRVREVFRQ 600 FDRHALELLE KMLTLDPLQR ISAKDALDAD YFWADPFPCD PKSLPKYESS HEFQTKNKRK 660 QQRENEEKAK KQKTQHPQQH ARLPPVQHSG QGQSQHWGGH NNYPMGNTGQ APLAAGGPSH 720 HQYGKPRGPP GGPNRYPPGG NPNPSGYYQD RSTGQGGAGF NSGPYPPHAR GPSASGPRGS 780 SAGYGPGPQN YPQQYGAGGR GPNVPGNRNQ QYNWPQQ

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

RVRTHIFTHS LKTQPHNYVN PNMKERQRWQ PEEDALLRAY VHQYGPKEWN LISHRMSKPL  60
DRDPKSCLER WKNYLKPGIK KGSLTPQEQS LVISLQAKYG NKWKKIASEV PGRTAKAIRK  120
VVEVFKEKQA KQQLQNSKXN NIGSSGSDIS TLQGGNISTS VGAVSGEPEK AVQGTYDHIL  180
ETFAEKYVQP YLNPASVVSV PVSLPVPVPV MPNLNSPILS LGSGAGAGSI SAPVAPDPGS  240
MVAATLPPWM SNSSASSSTT KSTTPSPSVS LTLSPSXTGG SGPGSGASTI RPPGSLPLQT  300
PVTGTLTNHG RSIDGQLNLD ESPSWGSRSV DCFEKLEQIG EGTYGQVYMA REIKTGEIVA  360
LKKIRMDNEK EGFPITAIRE IKILKKLQHD NVIKLKEIVT STGPEGDEHV KSGGHRYKGS  420
IYMVFEYMDH DLTGLADRPG MQFTIPQIKC YMKQLLTGLH YCHVNQVLHR DIKGSNLLID  480
NEGNLKLADF GLARTYSSDH KGNLTNRVIT LWYRPPELLL GATKYGPTVD MWSVGCIFAE  540
LLFGKPILTG KNEPEQITKI FELCGSPDEI IWPGVSRLPL YNKFKSPRPM KRRVREVFRQ  600
FDRHALELLE KMLTLDPLQR ISAKDALDAD YFWADPFPCD PKSLPKYESS HEFQTKNKRK  660
QQRENEEKAK KQKTQHPQQH ARLPPVQHSG QGQSQHWGGH NNYPMGNTGQ APLAAGGPSH  720
HQYGKPRGPP GGPNRYPPGG NPNPSGYYQD RSTGQGGAGF NSGPYPPHAR GPSASGPRGS  780
SAGYGPGPQN YPQQYGAGGR GPNVPGNRNQ QYNWPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4nst_A	1e-110	324	663	6	340	Cyclin-dependent kinase 12
4nst_C	1e-110	324	663	6	340	Cyclin-dependent kinase 12
6ckx_A	1e-110	324	663	6	340	Cyclin-dependent kinase 12
6ckx_C	1e-110	324	663	6	340	Cyclin-dependent kinase 12
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.6307	0.0	trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in flowers. Expressed in seedlings, roots, rosettes and stems. {ECO:0000269\|PubMed:12678503}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024969494.1	0.0	cyclin-dependent kinase C-1-like isoform X1
Swissprot	Q9LFT8	0.0	CDKC1_ARATH; Cyclin-dependent kinase C-1
TrEMBL	A0A103YDY9	0.0	A0A103YDY9_CYNCS; Protein kinase, ATP binding site-containing protein (Fragment)
STRING	XP_009627964.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-51	MYB family protein

Publications ? help Back to Top
Lee JY,Lee DH Use of serial analysis of gene expression technology to reveal changes in gene expression in Arabidopsis pollen undergoing cold stress. Plant Physiol., 2003. 132(2): p. 517-29 [PMID:12805584] Inzé D,De Veylder L Cell cycle regulation in plant development. Annu. Rev. Genet., 2006. 40: p. 77-105 [PMID:17094738] Cui X,Fan B,Scholz J,Chen Z Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Plant Cell, 2007. 19(4): p. 1388-402 [PMID:17468259] Takatsuka H,Umeda-Hara C,Umeda M Cyclin-dependent kinase-activating kinases CDKD;1 and CDKD;3 are essential for preserving mitotic activity in Arabidopsis thaliana. Plant J., 2015. 82(6): p. 1004-17 [PMID:25942995] Mittal S, et al. Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement. Front Chem, 2017. 5: p. 115 [PMID:29312925]