PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015284

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 439aa MW: 48071.8 Da PI: 5.0465

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-39569	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	449.5	2.2e-137	70	433	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAeav++++++la+al++++ la+ ++ +m ++a+yf+ ALa+r+++ +y p++ e++ e l++ f+e sP+lkf+h+taNq Aan015284 70 LVHTLMACAEAVQQDNMKLADALVKHVGILAAAQAGAMGKVATYFAGALAQRIYK----IY----PKDGLETSCWEILQM--HFYESSPYLKFAHFTANQ 159 689*************************************************9....44....444443334444333..4************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.. 198 aIlea++g++rvH++Df+++qG+QWpaL+qaLa Rp+gpp++R+Tgvg+p+++++++l+++g++La++Ae++gv+fef+ +va++l+d++ ++L++kp Aan015284 160 AILEAFAGATRVHVVDFSLNQGMQWPALMQALALRPGGPPTFRLTGVGPPQPDNTDALQQVGWKLAQLAETIGVQFEFRGFVANSLADIDASMLDIKPse 259 **********************************************************************************************88 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnv 297 E++aVn+v+++hrll++++++++ vL+ +k ++Pk+v++veqe++hn++ Fl+rf eal+yys++fdsl ++ l++ +++ ++++++lgr+i+n+ Aan015284 260 VEVVAVNSVFEMHRLLARPGAVDK----VLDSIKAMKPKIVTLVEQESNHNGAVFLDRFNEALHYYSTMFDSLeSSALSQPMSQDLVMSEVYLGRQICNI 355 899*********99999988....*****************************************666778888************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 va eg++r+erhetl +Wr r++++GF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ Aan015284 356 VASEGTDRVERHETLTQWRTRMNSSGFEPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 433 ***************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.146	44	412	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.5E-135	70	433	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MIDFGGDKVV ANNDPYDLSV IPGGAIYGST TEESRVIKRM RSEDVSSDML PPESPRPVVL 60 VDSQEAGIRL VHTLMACAEA VQQDNMKLAD ALVKHVGILA AAQAGAMGKV ATYFAGALAQ 120 RIYKIYPKDG LETSCWEILQ MHFYESSPYL KFAHFTANQA ILEAFAGATR VHVVDFSLNQ 180 GMQWPALMQA LALRPGGPPT FRLTGVGPPQ PDNTDALQQV GWKLAQLAET IGVQFEFRGF 240 VANSLADIDA SMLDIKPSEV EVVAVNSVFE MHRLLARPGA VDKVLDSIKA MKPKIVTLVE 300 QESNHNGAVF LDRFNEALHY YSTMFDSLES SALSQPMSQD LVMSEVYLGR QICNIVASEG 360 TDRVERHETL TQWRTRMNSS GFEPVHLGSN AFKQASMLLA LFAGGDGYRV EENDGCLMLG 420 WHTRPLIATS AWKPSGIES

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MIDFGGDKVV ANNDPYDLSV IPGGAIYGST TEESRVIKRM RSEDVSSDML PPESPRPVVL  60
VDSQEAGIRL VHTLMACAEA VQQDNMKLAD ALVKHVGILA AAQAGAMGKV ATYFAGALAQ  120
RIYKIYPKDG LETSCWEILQ MHFYESSPYL KFAHFTANQA ILEAFAGATR VHVVDFSLNQ  180
GMQWPALMQA LALRPGGPPT FRLTGVGPPQ PDNTDALQQV GWKLAQLAET IGVQFEFRGF  240
VANSLADIDA SMLDIKPSEV EVVAVNSVFE MHRLLARPGA VDKVLDSIKA MKPKIVTLVE  300
QESNHNGAVF LDRFNEALHY YSTMFDSLES SALSQPMSQD LVMSEVYLGR QICNIVASEG  360
TDRVERHETL TQWRTRMNSS GFEPVHLGSN AFKQASMLLA LFAGGDGYRV EENDGCLMLG  420
WHTRPLIATS AWKPSGIES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-67	65	434	14	380	Protein SCARECROW
5b3h_A	8e-67	65	434	13	379	Protein SCARECROW
5b3h_D	8e-67	65	434	13	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269\|PubMed:15347801}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996742.1	0.0	DELLA protein GAI-like
Swissprot	Q7Y1B6	0.0	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A0K0M6T2	0.0	A0A0K0M6T2_ARTAN; DELLA3 protein
STRING	VIT_14s0006g00640.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]