PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015357
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 383aa    MW: 42776.5 Da    PI: 5.6837
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41922341PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-22035PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.76.7e-105399242
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               + ++C+ +e+ ++ + C+ +   lC +C   +H+       H++vp+
  Aan015357 53 RVWVCEACEQAPAAFICKADAASLCTTCDAVIHSAnplarrHQRVPV 99
               5689*****************************66899999*99986 PP
2CCT67.34.3e-23314357144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF k++
  Aan015357 314 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFSKRT 357
                9***************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.0E-7956IPR000315B-box-type zinc finger
PROSITE profilePS501199.798956IPR000315B-box-type zinc finger
CDDcd000214.20E-51256No hitNo description
PROSITE profilePS5011911.3625299IPR000315B-box-type zinc finger
PfamPF006437.8E-85399IPR000315B-box-type zinc finger
CDDcd000211.77E-75599No hitNo description
SMARTSM003365.8E-115799IPR000315B-box-type zinc finger
PfamPF062033.5E-17314356IPR010402CCT domain
PROSITE profilePS5101716.47314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MLKEEICTTR GRVCDTCCCS PSTIFCEADL AYLCTRCDSQ VHAANKLSSR HKRVWVCEAC  60
EQAPAAFICK ADAASLCTTC DAVIHSANPL ARRHQRVPVM PISGSTYESQ GRFLSQGSDG  120
TVNKEEEDEA ASWLLFDAPA KNNQNQEYTN EFLFNGEGGV DEYLDLVDYN SCQDTQFSDD  180
HKCNDLQFDD DYKYTNDVTN YSKDIRKYGG GDADSLVPVR GGEAKKEHQI YDLNFQHQNF  240
QLGCDYEASN GGYSYPASLG HSVSMSSLDV GVVPESSISN SRSSISNSRS SKGTTDLFSG  300
PPIQMPTQLT PLDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFSKRTNVD  360
VEVDQMFSTT LITEGGYCIV LSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.200480.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983136.11e-163zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-118COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2U1N2R40.0A0A2U1N2R4_ARTAN; Constans-like protein
STRINGPOPTR_0017s14410.11e-143(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-106CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]