PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015379
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ARR-B
Protein Properties Length: 308aa    MW: 34309.8 Da    PI: 7.7274
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55101413PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-91032PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.92.6e-29149202155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ +LH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Aan015379 149 KPRVVWSIDLHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 202
                79*******************.********************************8 PP
2Response_reg60.49.8e-2159321109
                   TTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  21 egyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    +y +v++++++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  Ga  +l+Kp+  eel++
     Aan015379   5 CQY-HVTSTTEAITALQMLRENRnrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGITHGACSYLVKPVGLEELRN 93 
                   578.9999999********988889*******************87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.404199IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.6E-10195IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.9E-1271303IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.3E-302110No hitNo description
SuperFamilySSF521722.99E-272107IPR011006CheY-like superfamily
PfamPF000722.4E-17593IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.19E-21799No hitNo description
SuperFamilySSF466891.56E-19146206IPR009057Homeodomain-like
PROSITE profilePS5129411.427146205IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-30147207IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-25149202IPR006447Myb domain, plants
PfamPF002495.5E-6151201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
ALRXCQYHVT STTEAITALQ MLRENRNRFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM  60
LSANSDPKLV MKGITHGACS YLVKPVGLEE LRNVWQHVIR NYAMYDQDNS NLGGEGGQEA  120
GVEIRKRKDD DEDFVDNGNE DDESSTQKKP RVVWSIDLHR KFVAAVNQLG IEKAVPKRIL  180
DLMNVEGLTR ENVASHLQKY RLYLKRISQQ ANMVVAFGGS KEASSYMRSL DGFSDFRSLS  240
GSGRLPNAAL SSYPPSGMLS RLNSATGMTL HSLASPSMVQ PTHTQNLTNS IAPINKFQPV  300
VLQSPRTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25145208164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021990178.11e-173two-component response regulator ARR12-like
RefseqXP_024980218.11e-173two-component response regulator ARR12-like
SwissprotB8B3I41e-108ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-108ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A2U1MXR60.0A0A2U1MXR6_ARTAN; Two-component response regulator
STRINGXP_009757804.11e-135(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]