PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015461
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GATA
Protein Properties Length: 293aa    MW: 33203.7 Da    PI: 8.9107
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41965312PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-46251PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18226259134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C  tkTp+WR+gp g+ktLCnaCG++yr+ +
  Aan015461 226 CAHCEITKTPQWREGPTGPKTLCNACGVRYRSGR 259
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-16220270IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503224256IPR000679Zinc finger, GATA-type
CDDcd002022.33E-15225272No hitNo description
SuperFamilySSF577161.81E-14225283No hitNo description
Gene3DG3DSA:3.30.50.106.0E-15225257IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440226251IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16226259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVRGFAMESQ DMRMCKTEPG VTVDYNHRVY DEDCFGDIDI LNLFDFPMES LEGDGLAEDW  60
ASKLGPIPSE VLGSQIGVGN NFGSSTDLPF EYPVLNNITS QLKYSKNYYE ETPKHYQSVR  120
VPQLKQEPMF VEDKKLYPSQ ASPNSVLESR SSSSNSSKGV SFGIEISIPV RTRSKRLRPT  180
TNPWLLSPIT MFPNKDKKRK KPTQRPFIME TKSSEEISDD VGVKKCAHCE ITKTPQWREG  240
PTGPKTLCNA CGVRYRSGRL YPEYRPAASP TFVPALHSNS HRKVIEMRQK AYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RTRSKR
2196200KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024996188.11e-150GATA transcription factor 11-like
TrEMBLA0A2U1QP770.0A0A2U1QP77_ARTAN; Zinc finger, GATA-type
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-43GATA transcription factor 11