PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015529
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family Whirly
Protein Properties Length: 187aa    MW: 20704.5 Da    PI: 10.666
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-24658PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly95.94.3e-30116186171
     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlask 71 
                s+yk+kaal+v+++ p+f  ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te++++++l+++
  Aan015529 116 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFILLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAR 186
                7*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.2E-34106186IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.2E-30109185IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.1E-28117186IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
XKNSLPSSKN RVVEGFIKIL LLPSSQRGQA NIFTLTVTGE QLKMLNLSIP STPKSFITQN  60
PKSPFICLNP QSIKFINTKT STKHILKCQY SDQQQQRPDV SSYSQPQAPK VFIGHSIYKG  120
KAALTVEPRP PEFAPLDSGA FKLTKEGFIL LQFAPAAGVR QYDWSRKQVF SLSVTEIGSI  180
ISLGARX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A2e-4310918636113p24: plant transcriptional regulator PBF-2
1l3a_B2e-4310918636113p24: plant transcriptional regulator PBF-2
1l3a_C2e-4310918636113p24: plant transcriptional regulator PBF-2
1l3a_D2e-4310918636113p24: plant transcriptional regulator PBF-2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.184351e-147leaf
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022011838.13e-76single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL859e-44WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A251SC536e-75A0A251SC53_HELAN; Putative ssDNA-binding transcriptional regulator
STRINGXP_002520128.12e-46(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.12e-44ssDNA-binding transcriptional regulator