PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015540

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

HD-ZIP

Protein Properties

Length: 148aa MW: 17337.8 Da PI: 9.672

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-91937	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	11	65	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+ Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Aan015540 11 RKKLRLTKDVSVFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 65 677889999999*****************************************98 PP
2	HD-ZIP_I/II	124.7	4.3e-40	11	101	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+k+ + +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Aan015540 11 RKKLRLTKDVSVFLEDSFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 101 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.888	7	67	IPR001356	Homeobox domain
SMART	SM00389	2.6E-14	9	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-17	11	65	IPR009057	Homeodomain-like
CDD	cd00086	2.04E-12	11	68	No hit	No description
SuperFamily	SSF46689	1.54E-17	11	76	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-15	11	65	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	42	65	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.9E-11	67	101	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.1E-26	67	110	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSDEDEDGLT RKKLRLTKDV SVFLEDSFKE HSTLNPKQKQ ALAKQLNLRP RQVEVWFQNR 60 RARTKLKQTE VDCEYLKRCC ETLTEENRRL QKELQELRAL KTTQPFYMQM PATTLTMCPS 120 CERVATTTTH TATVSPRTQQ PANSSHRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	15	TRKKLRL
2	59	67	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023760379.1	7e-86	homeobox-leucine zipper protein HAT14
Swissprot	P46665	8e-77	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A2U1NHU0	6e-88	A0A2U1NHU0_ARTAN; Leucine zipper, homeobox-associated, Homeodomain-like protein
STRING	XP_004493598.1	2e-78	(Cicer arietinum)
STRING	Lus10004161	2e-78	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-76	homeobox from Arabidopsis thaliana