PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015622

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

C3H

Protein Properties

Length: 329aa MW: 35584.2 Da PI: 8.3962

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-148557	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.2	5.1e-12	13	37	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ Aan015622 13 EPDCVYFLKTGTCKYGSTCKYNHPR 37 789********************96 PP
2	zf-CCCH	35.3	1.9e-11	58	82	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ rtG Ck+G CkF+H++ Aan015622 58 EKPCPHYIRTGSCKFGVACKFHHPQ 82 689********************97 PP
3	zf-CCCH	38	2.7e-12	183	209	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tG CkyG+ Ck++H++ Aan015622 183 PGEPECRYFMNTGNCKYGSDCKYHHPK 209 5799*********************96 PP
4	zf-CCCH	32.9	1.1e-10	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++ +G+Ck+G++Ck+ H+ Aan015622 229 PGQAVCSYYSLYGICKFGPTCKYDHP 254 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.3E-6	10	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.793	10	38	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.5E-9	13	37	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	15	39	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-5	16	37	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.29E-7	54	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.094	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-4	57	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-8	58	82	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-5	59	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-7	182	209	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.361	182	210	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-10	184	209	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.29E-7	187	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.1E-6	188	210	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.16E-6	227	254	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-7	228	255	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.385	228	256	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.6E-8	230	254	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
VSDWGELPER VGEPDCVYFL KTGTCKYGST CKYNHPRDRR GAGPLVLNMI GLPMRQEEKP 60 CPHYIRTGSC KFGVACKFHH PQPSIDGSNG AYGSTTLVPS SGISAWSLLP RATYVTDPLL 120 QTTQQTYLPV VLPHSQGIPP AQGWSTYMGS MSSVNSASMF GGLGSLDQTY PLTSGANLLP 180 ERPGEPECRY FMNTGNCKYG SDCKYHHPKE KIAQMAASSL GPLGLPLRPG QAVCSYYSLY 240 GICKFGPTCK YDHPLMGYSY NYGMSMPPSM PMLDPSGFPY GGTFHSSVSS PSKSSKYAGA 300 KTPSRSRSRS PSPEQDEQHG ASPSHSESA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024960637.1	1e-175	zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBL	A0A2U1QFU1	0.0	A0A2U1QFU1_ARTAN; Zinc finger, CCCH-type
STRING	VIT_12s0059g01450.t01	1e-123	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-80	C3H family protein