PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015630

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 562aa MW: 61612.7 Da PI: 5.5785

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-64557	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9.1e-15	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ +++a k++G W +I +++g ++t+ q++s+ qk+ Aan015630 24 RERWTEDEHNSFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.44E-16	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.235	19	73	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-7	21	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-16	22	71	IPR006447	Myb domain, plants
SMART	SM00717	2.0E-11	23	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-12	24	67	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-8	26	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDSYSSGEKH NIKTRKPYTI TKQRERWTED EHNSFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEAIAKG VPIKQALDIE IPPPRPKRKP NYPYPRKTGP KDPQVAEKDG 120 KQETLISSLQ SGIQILDLEK NPLPQTTCHE EELGNETNEE HGTGTEGPSL SHEGPCASSD 180 NENSAPQAFK EFIPVLEKPI NQDETNGSFT SIETRKHQKL DKDGINYTTV TSNTSLYEGR 240 YPDKLSQPVL SLNDIRGVQN YPRHVPVQVI DGNQGKDTVP TETSFLESTL TKSGEVHDIV 300 NKAASATTSV HQNNASSYPT FHPLFTPFSN NQENHRSFLH VSSTVSSLIV SSLLQNPAAH 360 AAASFAATFW HPEASSGDSL SRDHPEPPSM AAIAAATVAA ATAWWAAHGL LPVCTPFYPG 420 YATSPYSCGT PTDANQERVA NNGTSEVVLQ EEKTEAEKTQ GLPKGSPDQS SSDDTDGKLN 480 TELSPDDTAP VAEVHDSTTA NIRKQVDRSS CGSNTTSSSE IETDALEKHG KEKEEAKVSD 540 VNLSCNDTMF RRSRGIINPN ES

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDSYSSGEKH NIKTRKPYTI TKQRERWTED EHNSFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEAIAKG VPIKQALDIE IPPPRPKRKP NYPYPRKTGP KDPQVAEKDG  120
KQETLISSLQ SGIQILDLEK NPLPQTTCHE EELGNETNEE HGTGTEGPSL SHEGPCASSD  180
NENSAPQAFK EFIPVLEKPI NQDETNGSFT SIETRKHQKL DKDGINYTTV TSNTSLYEGR  240
YPDKLSQPVL SLNDIRGVQN YPRHVPVQVI DGNQGKDTVP TETSFLESTL TKSGEVHDIV  300
NKAASATTSV HQNNASSYPT FHPLFTPFSN NQENHRSFLH VSSTVSSLIV SSLLQNPAAH  360
AAASFAATFW HPEASSGDSL SRDHPEPPSM AAIAAATVAA ATAWWAAHGL LPVCTPFYPG  420
YATSPYSCGT PTDANQERVA NNGTSEVVLQ EEKTEAEKTQ GLPKGSPDQS SSDDTDGKLN  480
TELSPDDTAP VAEVHDSTTA NIRKQVDRSS CGSNTTSSSE IETDALEKHG KEKEEAKVSD  540
VNLSCNDTMF RRSRGIINPN ES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.6081	0.0	trichome

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996248.1	0.0	protein LHY
Refseq	XP_024996249.1	0.0	protein LHY
Refseq	XP_024996250.1	0.0	protein LHY
TrEMBL	A0A2U1NBF7	0.0	A0A2U1NBF7_ARTAN; Late elongated hypocotyl
STRING	VIT_15s0048g02410.t01	1e-138	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	1e-57	MYB_related family protein