PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015759
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 177aa    MW: 19942.8 Da    PI: 6.793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41970096PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-133889PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.51.9e-47431761136
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA++v+sg++e a+ +L ++s+lasp+gd+mqR+a+yf+eALa+r++++++++ykal++++ s    se++ ++k+f+e +P+lk++++++Nq
  Aan015759  43 LIHLLLTCAKHVASGNFEHANIALDQISHLASPEGDTMQRIASYFAEALANRILKTWPGIYKALHSTRIS--LASENILVRKMFFEYFPYLKIAFVITNQ 140
                689*************************************************************998887..699************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                 I ea+ege+ vH+iD+++ +++QW aLl+ L++Rp
  Aan015759 141 VIIEAMEGEKIVHVIDLNAAEPTQWRALLRDLSARP 176
                **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.5417177IPR005202Transcription factor GRAS
PfamPF035146.7E-4543176IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MFQDDGSSSV TSTPVQMFPS MSMSPSPYPW LKELKSEERG LCLIHLLLTC AKHVASGNFE  60
HANIALDQIS HLASPEGDTM QRIASYFAEA LANRILKTWP GIYKALHSTR ISLASENILV  120
RKMFFEYFPY LKIAFVITNQ VIIEAMEGEK IVHVIDLNAA EPTQWRALLR DLSARPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-22261761153Protein SCARECROW
5b3h_D5e-22261761153Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728244.11e-119scarecrow-like protein 3
SwissprotQ9LPR89e-77SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1B0T6T01e-125A0A1B0T6T0_CHRMO; GRAS protein (Fragment)
TrEMBLA0A2U1N8W11e-125A0A2U1N8W1_ARTAN; GRAS protein
STRINGMigut.N02362.1.p2e-95(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.18e-74scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]