PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015843
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 434aa    MW: 48550.3 Da    PI: 6.2742
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41936540PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-52314PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.21.2e-92424312373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfshlt 97 
                ++lL++cA+a++s+d++l q++L+ l+++a +dgd++qRl+  f++AL ar a+  ++++k l++  ++++     ++ ++  l  f++++P+++f++ +
  Aan015843  42 EQLLVRCANAIESNDATLSQQILWVLNNIAPSDGDSNQRLTCGFLRALVARAAK--TGTFKMLTAALSNSNItiqtHKFSIIELASFVDLTPWHRFGFTA 139
                79****************************************************..666666655555544333114444445555************** PP

       GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vakrle 187
                aN aIlea+eg+++vHi+D+++++++Q p+L++a+a ++egpp l++T  g+ e +      ++ e+g +L +fA++ ++ +ef+v+        a+ +e
  Aan015843 140 ANAAILEAIEGHSTVHIVDLSLTHCMQIPTLIDAMAGKSEGPPLLKLTIAGATEDVppmLDLSYDELGVKLVNFARSRNIILEFTVIpssssdgFASLIE 239
                *************************************************9998877987888999**********************8887666666777 PP

       GRAS 188 dleleeL..rvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                 l+l++L   ++++Eal++n++++lh++++e+ +++       +r  +Lk+++sl+P++vv+++++ad +s+++ +r+ +a++y +  +d +++ lp+ s
  Aan015843 240 HLKLQRLvhGTETNEALIINCHMMLHYIPEETPTIPFsfedatPRALFLKQIRSLNPTLVVLADEDADFTSTNLITRLRSAFNYLWIPYDIVDTFLPKGS 339
                7788888444555****************999887654555678999***************************************************** PP

       GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                ++r+++E+  + ++i+nv+a+eg++r+er e  ++W +r+++ GF+ v+++e++++++k +l +++  g+ +++e++ lvl+Wk++++v+++aW
  Aan015843 340 KQRQWYEAD-ICWKIENVIAQEGSHRVERLEPRGRWVQRMRNTGFHGVAFGEDIVTEVKGMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 431
                *********.********************************************************.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.6815413IPR005202Transcription factor GRAS
PfamPF035144.3E-9042431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
XTKPCQNFTP MNPNQLQRTR HWPRFPAPNK ALGTFGDANC MEQLLVRCAN AIESNDATLS  60
QQILWVLNNI APSDGDSNQR LTCGFLRALV ARAAKTGTFK MLTAALSNSN ITIQTHKFSI  120
IELASFVDLT PWHRFGFTAA NAAILEAIEG HSTVHIVDLS LTHCMQIPTL IDAMAGKSEG  180
PPLLKLTIAG ATEDVPPMLD LSYDELGVKL VNFARSRNII LEFTVIPSSS SDGFASLIEH  240
LKLQRLVHGT ETNEALIINC HMMLHYIPEE TPTIPFSFED ATPRALFLKQ IRSLNPTLVV  300
LADEDADFTS TNLITRLRSA FNYLWIPYDI VDTFLPKGSK QRQWYEADIC WKIENVIAQE  360
GSHRVERLEP RGRWVQRMRN TGFHGVAFGE DIVTEVKGML DEHAAGWGLK KEEDDLVLTW  420
KGHNVVFATA WVPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-503643428421Protein SHORT-ROOT
5b3h_E4e-503643428421Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024975224.10.0scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1B0T6R00.0A0A1B0T6R0_CHRMO; GRAS protein (Fragment)
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein