PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015861

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

GRAS

Protein Properties

Length: 212aa MW: 25038.2 Da PI: 7.9733

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Artemisia_annua-81236	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	123.1	3.4e-38	78	212	174	308
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +fe+n+++++++e++++e+L+++++E l+Vn++ + ++llde+ +s+rd+vLklv++++P++++++ + +++++ F++rf eal +ysalfd+++a Aan015861 78 FSFEYNAIATQNWEMIKIEDLKLQRNEFLVVNCHARFENLLDETNVKDSPRDRVLKLVRDMKPDLFIHSIVNGSYSAPFFVTRFKEALFHYSALFDMFDA 177 68****999************************************************************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrer 308 ++ r++e+r+++E+ ++gre++nv+aceg er+er Aan015861 178 TMDRDNEQRQNYEKSFFGREVMNVIACEGHERVER 212 ******************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.491	1	212	IPR005202	Transcription factor GRAS
Pfam	PF05340	1.5E-27	5	81	IPR008004	Uncharacterised protein family UPF0503
Pfam	PF03514	1.2E-35	78	212	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
DALGSASVFS QKLRKWRQKQ KEKKQCKRFN AGIDFERSRL GRDSQSEVAD YGLGRRSCDT 60 EPRFSIDAHR LSVEDPRFSF EYNAIATQNW EMIKIEDLKL QRNEFLVVNC HARFENLLDE 120 TNVKDSPRDR VLKLVRDMKP DLFIHSIVNG SYSAPFFVTR FKEALFHYSA LFDMFDATMD 180 RDNEQRQNYE KSFFGREVMN VIACEGHERV ER

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024968070.1	2e-70	scarecrow-like protein 14
Swissprot	P0C884	9e-55	SCL34_ARATH; Scarecrow-like protein 34
TrEMBL	A0A1B0T6S6	2e-85	A0A1B0T6S6_CHRMO; GRAS protein (Fragment)
STRING	XP_008359013.1	1e-59	(Malus domestica)
STRING	XP_009606498.1	2e-59	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	5e-57	GRAS family protein