PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015869
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YB
Protein Properties Length: 153aa    MW: 16925.2 Da    PI: 4.4037
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-230160993PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.41.8e-23991385
      NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
               ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf dy+e++ +
  Aan015869  9 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALEVLGFGDYIEEVYA 91
               6899***************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.7E-386136IPR009072Histone-fold
SuperFamilySSF471131.77E-3410137IPR009072Histone-fold
PfamPF008082.4E-201277IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
PMDIVGKTKE DASLPKATMT KIIKEMLPPD VRVARDTQDL LIECCVEFIN LISSESNEVC  60
SREDKRTIAP EHVLKALEVL GFGDYIEEVY AAYEQHKLET VDTVRAGKCT NGAEMTEEEA  120
LAEQQRMFAE ARARMNGVAA APKPPEAEPS LNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-341013212133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.61422e-84trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024971645.11e-108protein Dr1 homolog
SwissprotP495921e-85NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1B0T7011e-107A0A1B0T701_CHRMO; NF-Y protein (Fragment)
STRINGPGSC0003DMT4000104363e-96(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.43e-88nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]